• binning 1
• bioinformatics 1
• c++ 1
• commentary 4
• community ecology 1
• coverage 2
• divulgation 1
• environmental genomics 1
• evolution 2
• experiment 1
• genomics 18
• history 1
• human microbiome 1
• metagenomics 21
• microbial ecology 12
• miga 1
• networks 1
• nomenclature 4
• perl 1
• philosophy 1
• phylogenomics 1
• phylogeny 1
• plan pathology 2
• plant pathology 1
• plastic degradation 1
• population ecology 2
• python 1
• quality 1
• r 3
• ruby 3
• seqcode 2
• software 11
• species concept 2
• statistics 9
• taxonomy 13
• technical 1
• time series 1
• transcriptomics 1
• web app 4

binning

• Fecal MAG quality

bioinformatics

• AAI: BLAST vs Diamond

c++

• Nonpareil

commentary

• A Defense of Prokaryotes
• Rereading Microbial Communities Under the Light of Metagenomics
• Metagenomic Coverage
• Bypassing cultivation

community ecology

• Maputo children: comparative fecal microbiome

coverage

• Nonpareil
• Nonpareil

divulgation

• Bypassing cultivation

environmental genomics

• Lignocellulolytic consortium

evolution

• Kalamas Genome diversity
• Phylogeny of Xanthomonas

experiment

• AAI: BLAST vs Diamond

genomics

• SeqCode Registry
• Lignocellulolytic consortium
• RecruitPlotEasy Announcement
• RecruitPlotEasy
• ANI debate reply
• Fecal MAG quality
• Genome classification
• Using MiGA
• Freshwater Iterative Subtractive Binning
• Fonsibacter lacus
• Kalamas Genome diversity
• MiGA Webserver
• Nonpareil 3
• Enveomics Collection
• MiGA
• Enveomics Collection
• Phylogeny of Xanthomonas
• Polloc

history

• Development of the SeqCode

human microbiome

• Maputo children: comparative fecal microbiome

metagenomics

• Maputo children: comparative fecal microbiome
• RecruitPlotEasy Announcement
• RecruitPlotEasy
• ANI debate reply
• Specialization-Disturbance Hypothesis tested in a mesocosm
• Fecal MAG quality
• Freshwater Iterative Subtractive Binning
• Fonsibacter lacus
• Kalamas Genome diversity
• 16S vs ANI
• Rereading Microbial Communities Under the Light of Metagenomics
• ROCker
• Bioinformatics and Microbial Ecology
• Enveomics Collection
• Macondo Oil Spill
• Metagenomic Coverage
• Bypassing cultivation
• Enveomics Collection
• Nonpareil
• Analysis of Metagenomes
• Nonpareil

microbial ecology

• ANI debate reply
• Specialization-Disturbance Hypothesis tested in a mesocosm
• Freshwater Iterative Subtractive Binning
• Fonsibacter lacus
• Kalamas Genome diversity
• MiGA Webserver
• Nonpareil 3
• 16S vs ANI
• Rereading Microbial Communities Under the Light of Metagenomics
• Bioinformatics and Microbial Ecology
• Macondo Oil Spill
• MiGA

miga

• AAI: BLAST vs Diamond

networks

• Phytophthora infestans expression in planta

nomenclature

• SeqCode Registry
• 65,000 names
• SeqCode
• Development of the SeqCode

perl

• Enveomics Collection

philosophy

• A Defense of Prokaryotes

phylogenomics

• Phylogeny of Xanthomonas

phylogeny

• A Defense of Prokaryotes

plan pathology

• Phylogeny of Xanthomonas
• Phytophthora infestans expression in planta

plant pathology

• Polloc

plastic degradation

• Lignocellulolytic consortium

population ecology

• RecruitPlotEasy Announcement
• RecruitPlotEasy

python

• RecruitPlotEasy

quality

• Fecal MAG quality

r

• RecruitPlotEasy
• Enveomics Collection
• Nonpareil

ruby

• SeqCode Registry
• MiGA
• Enveomics Collection

seqcode

• SeqCode
• Development of the SeqCode

software

• RecruitPlotEasy Announcement
• Using MiGA
• MiGA Webserver
• Nonpareil 3
• Rereading Microbial Communities Under the Light of Metagenomics
• ROCker
• Bioinformatics and Microbial Ecology
• Enveomics Collection
• Nonpareil
• Phylogeny of Xanthomonas
• Polloc

species concept

• ANI debate reply
• Bypassing cultivation

statistics

• 16S vs ANI
• Rereading Microbial Communities Under the Light of Metagenomics
• ROCker
• Bioinformatics and Microbial Ecology
• Enveomics Collection
• Metagenomic Coverage
• Enveomics Collection
• Nonpareil
• Nonpareil

taxonomy

• SeqCode Registry
• Lignocellulolytic consortium
• SeqCode
• Development of the SeqCode
• ANI debate reply
• Genome classification
• Using MiGA
• Freshwater Iterative Subtractive Binning
• Fonsibacter lacus
• A Defense of Prokaryotes
• MiGA Webserver
• Nonpareil 3
• MiGA

technical

• AAI: BLAST vs Diamond

time series

• Macondo Oil Spill

transcriptomics

• Phytophthora infestans expression in planta

web app

• Using MiGA
• MiGA Webserver
• Nonpareil 3
• MiGA